Translations by Steve Langasek

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

digipeater for APRS

This is the main package that includes the Asterisk daemon and most channel drivers and applications.

asterisk extra sound files - English/g722

Asterisk includes a set of standard sound files in various formats. This package contains several "on-hold" music files in raw G.722 format (mildly compressed wide-band codec).

makes managing and searching for music easier

AudioLink is a tool that makes searching for music on your local storage media easier and faster. Your searches can include a variety of criteria, like male artists, female artists, band, genre, etc.

It works with MP3 and Ogg Vorbis files and creates a MySQL database in which it stores the information about the music files. It creates symbolic links to the actual music files based on the search results. You can search for multiple fields, like artist, band, composer, lyricist, etc.

AutoClass solves the problem of automatic discovery of classes in data (sometimes called clustering, or unsupervised learning), as distinct from the generation of class descriptions from labeled examples (called supervised learning). It aims to discover the "natural" classes in the data. AutoClass is applicable to observations of things that can be described by a set of attributes, without referring to other things. The data values corresponding to each attribute are limited to be either numbers or the elements of a fixed set of symbols. With numeric data, a measurement error must be provided.

Bio++ Phylogenetic Viewer

system load dockapp with a duck

A load monitor dockapp, descended from wmfishtime and bubblemon. Features include fish representing network traffic, bubbles representing CPU usage, and a duck representing a duck.

field-theory motivated computer algebra system

Cadabra is a computer algebra system designed specifically for the solution of problems encountered in field theory. It has extensive functionality for tensor polynomial simplification including multi-term symmetries, fermions and anti-commuting variables, Clifford algebras and Fierz transformations, implicit coordinate dependence, multiple index types and many more. The input format is a subset of TeX.

lightweight ncurses audio player

C* Music Player is a modular and very configurable ncurses-based audio player. It has some interesting features like configurable colorscheme, mp3 and ogg streaming, it can be controlled with an UNIX socket, filters, album/artists sorting and a vi-like configuration interface.

polymorphic plotting program

ctioga2 is a plotting program in the spirit of gnuplot. It can be used either directly on command-line or writing command files (or a mix of both). It produces publication-quality PDF files. It is based on the Tioga plotting library.

ctioga2 is a full rewrite of ctioga and is meant to replace it completely in a not-so-distant future.

Finds visually similar or duplicate images

findimagedupes is a commandline utility which performs a rough "visual diff" to two images. This allows you to compare two images or a whole tree of images and determine if any are similar or identical. On common image types, findimagedupes seems to be around 98% accurate.

stand-alone sound visualisation for Linux

This application based on libsdl and on the alsa audio driver provides visualisation to the sound reproduced by a sound device creating waves and particular effects.

chess engine, to calculate chess moves

This is a very strong chess engine, placed second in the 13th world computer chess championship 2005. It uses the UCI (universal chess interface), for chess engines as communication protocol. This means to play against it, you will have to use an UCI capable interface, like knights. This distribution comes with an opening book of moves that the engine can use for the first few moves of the game. This increases performance in the chess games opening.

General Atomistic Modelling Graphic Interface (GAMGI)

The General Atomistic Modelling Graphic Interface (GAMGI) provides a graphical interface to build, view and analyze atomic structures. The program is aimed at the scientific community and provides a graphical interface to study atomic structures and to prepare images for presentations, and for teaching the atomic structure of matter.

GPL Arcade Volleyball

GAV stands for GPL Arcade Volleyball, and is an SDL remake of the old DOS game Arcade Volleyball. It includes multiplayer, networking, and themeable graphics support.

More information, as well as additional themes, can be found at <http://gav.sourceforge.net>.

lightweight crystal structures visualizer

GNOME Crystal is a light model visualizer for crystal-structures. It is based on the GNOME Chemistry Utils and should display models of all sorts of crystal microscopic structures using OpenGL.

Periodic Table viewer

Geographic Information Systems (GIS) workstation

This task sets up your system to be a GIS workstation to process geographical information and make maps.

program for reception and transmission of QRSS/DFCW signals

Glfer is composed of two main parts: a spectrogram window, where you can see the spectrum of the received signal vs. time and transmission functions, to emit cw characters at a slow but precisely controlled speed, using the QRSS (slow CW) or DFCW (Dual Frequency CW) modes.

Gnuplot is a portable command-line driven interactive data and function plotting utility that supports lots of output formats, including drivers for many printers, (La)TeX, (x)fig, Postscript, and so on. The X11-output is packaged in gnuplot-x11.

The gphoto2 library can be used by applications to access various digital camera models, via standard protocols such as USB Mass Storage and PTP, or vendor-specific protocols.

GNU Scientific Library (GSL) -- binary package

This package provides several example binaries.

program for recording soundfiles with jack

With this program you can record any sound which is played via jack.

jack_capture allow you record to all formats supported by sndfile. (wav, aiff, ogg, flac, wavex, au, etc.)

This package contains the main application.

This package contains the frontend.

utility to mark up significant differences between LaTeX files

latexdiff compares two LaTeX files and marks up significant differences between them (i.e. a diff for LaTeX files). It generates a new LaTeX file containing the annotated differences.